Cre12.g511900.t1.2 D-ribulose-5-phosphate-3-epimerase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g511900.t1.2 chromosome_12 D-ribulose-5-phosphate-3-epimerase CDS 1825706 1828406 + 2 700

Phytozome

Locus Genomic View Functional Annotation
Cre12.g511900.t1.2 Cre12.g511900.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
RPE1 g12310.t1, Cre12.g511900.t1.1 JGI135614 30792739 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0024
motif_0024_1

motif_0024_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.4e-16
Motif Bicluster: 
bicluster_0024
Width: 
24
Number of Sites: 
1
Consensus: 
GTAaATACCAGCCCAAACTAAACC
motif_0024_2

motif_0024_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.2e-20
Motif Bicluster: 
bicluster_0024
Width: 
23
Number of Sites: 
1
Consensus: 
cCacCaCCacCacCAcCnCCACC
 0.17
bicluster_0169
motif_0169_1

motif_0169_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0003
Motif Bicluster: 
bicluster_0169
Width: 
14
Number of Sites: 
1
Consensus: 
ACACAcGCACaCgC
motif_0169_2

motif_0169_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.1e-21
Motif Bicluster: 
bicluster_0169
Width: 
21
Number of Sites: 
1
Consensus: 
CaGCacCAgCagCagCggCAg
 0.25

GO Terms

GO:0016857 GO:0005975 -

racemase and epimerase activity, acting on carbohydrates and derivatives

GO Category: 
molecular_function
Details: 
Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.

carbohydrate metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI135614

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