Cre06.g250902.t1.1 Homocysteine S-methyltransferase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g250902.t1.1 chromosome_6 Homocysteine S-methyltransferase family protein CDS 270023 282404 - 12 381

Phytozome

Locus Genomic View Functional Annotation
Cre06.g250902.t1.1 Cre06.g250902.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g5619.t1 Not available 30779395 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0105
motif_0105_1

motif_0105_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000014
Motif Bicluster: 
bicluster_0105
Width: 
21
Number of Sites: 
1
Consensus: 
CagCaGcAGCTGcTGgTGCaG
motif_0105_2

motif_0105_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
82
Motif Bicluster: 
bicluster_0105
Width: 
21
Number of Sites: 
1
Consensus: 
TcTtcatcatcacCTtcangT
 0.21
bicluster_0169
motif_0169_1

motif_0169_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0003
Motif Bicluster: 
bicluster_0169
Width: 
14
Number of Sites: 
1
Consensus: 
ACACAcGCACaCgC
motif_0169_2

motif_0169_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.1e-21
Motif Bicluster: 
bicluster_0169
Width: 
21
Number of Sites: 
1
Consensus: 
CaGCacCAgCagCagCggCAg
 0.25

GO Terms

GO:0042558 GO:0031419 GO:0046872 GO:0008898 GO:0008705 GO:0009086 GO:0005622 -

pteridine-containing compound metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways involving any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid.

cobalamin binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.

metal ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any metal ion.

homocysteine S-methyltransferase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine.

methionine synthase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: (6S)-5-methyl-5,6,7,8-tetrahydrofolate + L-homocysteine = (6S)-5,6,7,8-tetrahydrofolate + L-methionine.

methionine biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.

intracellular

GO Category: 
cellular_component
Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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