Cre01.g042900.t1.2 Ribosomal RNA adenine dimethylase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g042900.t1.2 chromosome_1 Ribosomal RNA adenine dimethylase family protein CDS 6043936 6048637 + 4 701

Phytozome

Locus Genomic View Functional Annotation
Cre01.g042900.t1.2 Cre01.g042900.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
RRM1 g960.t1, Cre01.g042900.t1.1 JGI206075 30789042 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0068
motif_0068_1

motif_0068_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.4
Motif Bicluster: 
bicluster_0068
Width: 
21
Number of Sites: 
1
Consensus: 
CGCTgCTGCcGCtGCtGCTGc
motif_0068_2

motif_0068_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3500
Motif Bicluster: 
bicluster_0068
Width: 
24
Number of Sites: 
1
Consensus: 
TtttagtanAgtTcnCnAtAATtA
 0.13
bicluster_0204
motif_0204_1

motif_0204_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
0.000000031
Motif Bicluster: 
bicluster_0204
Width: 
24
Number of Sites: 
1
Consensus: 
CnGCCgCtGctnCtGCctCtGCcg
motif_0204_2

motif_0204_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
21
Motif Bicluster: 
bicluster_0204
Width: 
21
Number of Sites: 
1
Consensus: 
AaTAaaaTgTaTTcaaAaAnT
 0.23

GO Terms

GO:0000179 GO:0008649 GO:0000154 -

rRNA (adenine-N6,N6-)-dimethyltransferase activity

GO Category: 
molecular_function
Details: 
Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.

rRNA methyltransferase activity

GO Category: 
molecular_function
Details: 
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.

rRNA modification

GO Category: 
biological_process
Details: 
The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI206075

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