Cre02.g097400.t1.2 eukaryotic elongation factor 5A-1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g097400.t1.2 chromosome_2 eukaryotic elongation factor 5A-1 CDS 4069253 4071505 - 2 252

Phytozome

Locus Genomic View Functional Annotation
Cre02.g097400.t1.2 Cre02.g097400.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
EIF5A g1982.t1, Cre02.g097400.t1.1 JGI126557 30785064 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0066
motif_0066_1

motif_0066_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2300
Motif Bicluster: 
bicluster_0066
Width: 
24
Number of Sites: 
1
Consensus: 
CCCACATCAaaCnaGCgtTGaCcT
motif_0066_2

motif_0066_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3200
Motif Bicluster: 
bicluster_0066
Width: 
15
Number of Sites: 
1
Consensus: 
gTAggTTtTGtaGcT
 0.15
bicluster_0099
motif_0099_1

motif_0099_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.026
Motif Bicluster: 
bicluster_0099
Width: 
21
Number of Sites: 
1
Consensus: 
tGGtGgTGGCgGnGGCgGtGG
motif_0099_2

motif_0099_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
14
Motif Bicluster: 
bicluster_0099
Width: 
15
Number of Sites: 
1
Consensus: 
atacTaTacTTTtTT
 0.15

GO Terms

GO:0003723 GO:0003746 GO:0043022 GO:0006452 GO:0045901 GO:0045905 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

translation elongation factor activity

GO Category: 
molecular_function
Details: 
Functions in chain elongation during polypeptide synthesis at the ribosome.

ribosome binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any part of a ribosome.

translational frameshifting

GO Category: 
biological_process
Details: 
A mechanism whereby different proteins may result from a single mRNA molecule, due to a change in the parsing of three nucleotides per codon relative to an initiating AUG codon.

positive regulation of translational elongation

GO Category: 
biological_process
Details: 
Any process that activates or increases the frequency, rate or extent of translational elongation.

positive regulation of translational termination

GO Category: 
biological_process
Details: 
Any process that activates or increases the frequency, rate or extent of translational termination.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI126557

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