Cre02.g118300.t1.2 DEAD box RNA helicase (PRH75)

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g118300.t1.2 chromosome_2 DEAD box RNA helicase (PRH75) CDS 6731867 6736494 + 4 627

Phytozome

Locus Genomic View Functional Annotation
Cre02.g118300.t1.2 Cre02.g118300.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
HEL12, RHE g2455.t1, Cre02.g118300.t1.1 JGI196585 30784864 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0068
motif_0068_1

motif_0068_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.4
Motif Bicluster: 
bicluster_0068
Width: 
21
Number of Sites: 
1
Consensus: 
CGCTgCTGCcGCtGCtGCTGc
motif_0068_2

motif_0068_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3500
Motif Bicluster: 
bicluster_0068
Width: 
24
Number of Sites: 
1
Consensus: 
TtttagtanAgtTcnCnAtAATtA
 0.13
bicluster_0194
motif_0194_1

motif_0194_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.2
Motif Bicluster: 
bicluster_0194
Width: 
24
Number of Sites: 
1
Consensus: 
CTGCtGgTGgTGCTGtTGCTGCTG
motif_0194_2

motif_0194_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
170
Motif Bicluster: 
bicluster_0194
Width: 
11
Number of Sites: 
1
Consensus: 
gaGCAACAAAA
 0.14

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 GO:0003723 GO:0005634 -

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

ATP-dependent helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI196585

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