Cre06.g268600.t1.2 glycine-rich protein 2B

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g268600.t1.2 chromosome_6 glycine-rich protein 2B CDS 2438365 2442450 + 4 085

Phytozome

Locus Genomic View Functional Annotation
Cre06.g268600.t1.2 Cre06.g268600.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
NAB1 g6026.t1, Cre06.g268600.t1.1 JGI126810 30779749 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0034
motif_0034_1

motif_0034_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.028
Motif Bicluster: 
bicluster_0034
Width: 
20
Number of Sites: 
1
Consensus: 
tnAccAttATTTAttAAtAt
motif_0034_2

motif_0034_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.1
Motif Bicluster: 
bicluster_0034
Width: 
24
Number of Sites: 
1
Consensus: 
cAaATgCAGTAGCtncagCagcaG
 0.10
bicluster_0120
motif_0120_1

motif_0120_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.3
Motif Bicluster: 
bicluster_0120
Width: 
21
Number of Sites: 
1
Consensus: 
tTAaTaaaTnataAgagatTa
motif_0120_2

motif_0120_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.7
Motif Bicluster: 
bicluster_0120
Width: 
14
Number of Sites: 
1
Consensus: 
AaaAGcaCAAGnaA
 0.17

GO Terms

GO:0003676 GO:0003677 GO:0006355 -

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

DNA binding

GO Category: 
molecular_function
Details: 
Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid).

regulation of transcription, DNA-dependent

GO Category: 
biological_process
Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

Interaction Target Module Weight
up-regulates bicluster_0021 0.05
up-regulates bicluster_0033 0.05
up-regulates bicluster_0034 0.03
up-regulates bicluster_0057 0.02
up-regulates bicluster_0076 0.04
up-regulates bicluster_0104 0.05
up-regulates bicluster_0133 0.04
up-regulates bicluster_0136 0.07
down-regulates bicluster_0144 0.05
down-regulates bicluster_0151 0.05
up-regulates bicluster_0186 0.02
up-regulates bicluster_0210 0.03

String Network

Link to STRING STRING Network
JGI126810

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