Cre07.g341800.t1.2 nuclear factor Y, subunit B11

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre07.g341800.t1.2 chromosome_7 nuclear factor Y, subunit B11 CDS 4260861 4263302 + 2 441

Phytozome

Locus Genomic View Functional Annotation
Cre07.g341800.t1.2 Cre07.g341800.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g7952.t1, Cre07.g341800.t1.1 Not available 30775065 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0092
motif_0092_1

motif_0092_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000018
Motif Bicluster: 
bicluster_0092
Width: 
21
Number of Sites: 
1
Consensus: 
CCgnCgCCtCCacCaCcaCCa
motif_0092_2

motif_0092_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.2
Motif Bicluster: 
bicluster_0092
Width: 
21
Number of Sites: 
1
Consensus: 
AtGTgTgTtTgTTtGtgtnTG
 0.26
bicluster_0094
motif_0094_1

motif_0094_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000035
Motif Bicluster: 
bicluster_0094
Width: 
15
Number of Sites: 
1
Consensus: 
GcGGCGGcGgcGGcG
motif_0094_2

motif_0094_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
130
Motif Bicluster: 
bicluster_0094
Width: 
24
Number of Sites: 
1
Consensus: 
AnGAnGagGagGAgGAGGnaGAcg
 0.32

GO Terms

GO:0043565 GO:0005622 -

sequence-specific DNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

intracellular

GO Category: 
cellular_component
Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

Interaction Target Module Weight
down-regulates bicluster_0008 0.04
down-regulates bicluster_0009 0.04
down-regulates bicluster_0024 0.04
down-regulates bicluster_0050 0.06
up-regulates bicluster_0059 0.06
up-regulates bicluster_0092 0.04
up-regulates bicluster_0141 0.07
down-regulates bicluster_0154 0.06
up-regulates bicluster_0158 0.06
down-regulates bicluster_0193 0.06

String Network

Link to STRING STRING Network

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