Cre08.g358532.t1.1 GATA transcription factor 9

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre08.g358532.t1.1 chromosome_8 GATA transcription factor 9 CDS 109546 114407 + 4 861

Phytozome

Locus Genomic View Functional Annotation
Cre08.g358532.t1.1 Cre08.g358532.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g8349.t1, Cre28.g777506.t1.1, Cre28.g777506.t1.2 Not available 30774142 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0138
motif_0138_1

motif_0138_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3e-37
Motif Bicluster: 
bicluster_0138
Width: 
24
Number of Sites: 
1
Consensus: 
ACACaCACaCACACACACACACaC
motif_0138_2

motif_0138_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000013
Motif Bicluster: 
bicluster_0138
Width: 
15
Number of Sites: 
1
Consensus: 
ACACACacaCACACA
 0.23
bicluster_0183
motif_0183_1

motif_0183_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
5.5e-31
Motif Bicluster: 
bicluster_0183
Width: 
24
Number of Sites: 
1
Consensus: 
GtGTgcGTGTGTGtGtGTGTGtGt
motif_0183_2

motif_0183_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.7e-18
Motif Bicluster: 
bicluster_0183
Width: 
24
Number of Sites: 
1
Consensus: 
TGcGTgtGTGTGTGTGTgtgcGtG
 0.25

GO Terms

GO:0003700 GO:0008270 GO:0043565 GO:0006355 GO:0003682 -

sequence-specific DNA binding transcription factor activity

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.

zinc ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.

sequence-specific DNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

regulation of transcription, DNA-dependent

GO Category: 
biological_process
Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.

chromatin binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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