Cre09.g386753.t1.1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g386753.t1.1 chromosome_9 CDS 222818 223812 - 994

Phytozome

Locus Genomic View Functional Annotation
Cre09.g386753.t1.1 Cre09.g386753.t1.1

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g9135.t1, Cre29.g778700.t1.1, Cre29.g778700.t1.2 Not available 30781522 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0049
motif_0049_1

motif_0049_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
15000
Motif Bicluster: 
bicluster_0049
Width: 
11
Number of Sites: 
1
Consensus: 
ATTAtTTTGgG
motif_0049_2

motif_0049_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1400
Motif Bicluster: 
bicluster_0049
Width: 
14
Number of Sites: 
1
Consensus: 
ATCatTcATACaTG
 0.21
bicluster_0076
motif_0076_1

motif_0076_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000000037
Motif Bicluster: 
bicluster_0076
Width: 
21
Number of Sites: 
1
Consensus: 
AgCAcCaGCgccaGCaGCaGC
motif_0076_2

motif_0076_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000007
Motif Bicluster: 
bicluster_0076
Width: 
23
Number of Sites: 
1
Consensus: 
TTACAtTCATGAttatTtAAgaA
 0.17

GO Terms

GO:0003677 GO:0006355 GO:0005634 -

DNA binding

GO Category: 
molecular_function
Details: 
Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid).

regulation of transcription, DNA-dependent

GO Category: 
biological_process
Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

Interaction Target Module Weight
down-regulates bicluster_0027 0.07
down-regulates bicluster_0035 0.07
down-regulates bicluster_0067 0.07
down-regulates bicluster_0098 0.06
up-regulates bicluster_0149 0.07
down-regulates bicluster_0166 0.05
up-regulates bicluster_0172 0.05
down-regulates bicluster_0175 0.05

String Network

Link to STRING STRING Network

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