Cre12.g540200.t1.2 DEA(D/H)-box RNA helicase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g540200.t1.2 chromosome_12 DEA(D/H)-box RNA helicase family protein CDS 9377801 9385372 + 7 571

Phytozome

Locus Genomic View Functional Annotation
Cre12.g540200.t1.2 Cre12.g540200.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
HEL58 g13772.t1, Cre12.g540200.t1.1 JGI103049 30792196 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0123
motif_0123_1

motif_0123_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00028
Motif Bicluster: 
bicluster_0123
Width: 
21
Number of Sites: 
1
Consensus: 
GCagnnGCTGcTGcnGaTGgt
motif_0123_2

motif_0123_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3400
Motif Bicluster: 
bicluster_0123
Width: 
21
Number of Sites: 
1
Consensus: 
CTCcGCCGCCGcCgcCgCcgC
 0.24
bicluster_0165
motif_0165_1

motif_0165_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000000012
Motif Bicluster: 
bicluster_0165
Width: 
24
Number of Sites: 
1
Consensus: 
GCCGcTGCTGctgCTGCtGCTGCT
motif_0165_2

motif_0165_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.018
Motif Bicluster: 
bicluster_0165
Width: 
24
Number of Sites: 
1
Consensus: 
TTtCaTTgctttttaTtttTacTg
 0.15

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 -

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

ATP-dependent helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI103049

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