Cre12.g546050.t1.2 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g546050.t1.2 chromosome_12 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDS 8710460 8717173 - 6 713

Phytozome

Locus Genomic View Functional Annotation
Cre12.g546050.t1.2 Cre12.g546050.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
DXR1 g13634.t1, Cre12.g546050.t1.1 JGI196606 30793428 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0024
motif_0024_1

motif_0024_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.4e-16
Motif Bicluster: 
bicluster_0024
Width: 
24
Number of Sites: 
1
Consensus: 
GTAaATACCAGCCCAAACTAAACC
motif_0024_2

motif_0024_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.2e-20
Motif Bicluster: 
bicluster_0024
Width: 
23
Number of Sites: 
1
Consensus: 
cCacCaCCacCacCAcCnCCACC
 0.17
bicluster_0072
motif_0072_1

motif_0072_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000002
Motif Bicluster: 
bicluster_0072
Width: 
24
Number of Sites: 
1
Consensus: 
GcGGAGGcGGaGGtgGAGGcgGcG
motif_0072_2

motif_0072_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.4
Motif Bicluster: 
bicluster_0072
Width: 
22
Number of Sites: 
1
Consensus: 
gCCtcCaCCcTCtnCaCCAcCa
 0.14

GO Terms

GO:0070402 GO:0055114 GO:0005515 -

NADPH binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.

oxidation-reduction process

GO Category: 
biological_process
Details: 
A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

protein binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI196606

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