Cre12.g558400.t1.1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g558400.t1.1 chromosome_12 CDS 7215985 7221261 + 5 276

Phytozome

Locus Genomic View Functional Annotation
Cre12.g558400.t1.1 Cre12.g558400.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TRR2 g13361.t1 JGI285902 30792052 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0068
motif_0068_1

motif_0068_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.4
Motif Bicluster: 
bicluster_0068
Width: 
21
Number of Sites: 
1
Consensus: 
CGCTgCTGCcGCtGCtGCTGc
motif_0068_2

motif_0068_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3500
Motif Bicluster: 
bicluster_0068
Width: 
24
Number of Sites: 
1
Consensus: 
TtttagtanAgtTcnCnAtAATtA
 0.13
bicluster_0152
motif_0152_1

motif_0152_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0012
Motif Bicluster: 
bicluster_0152
Width: 
24
Number of Sites: 
1
Consensus: 
CTgCgGCtgCTGctgCTGcnGCTG
motif_0152_2

motif_0152_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1500
Motif Bicluster: 
bicluster_0152
Width: 
11
Number of Sites: 
1
Consensus: 
TTGCAAatgCa
 0.15

GO Terms

GO:0008479 GO:0006400 GO:0008616 -

queuine tRNA-ribosyltransferase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine.

tRNA modification

GO Category: 
biological_process
Details: 
The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.

queuosine biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI285902

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