PHATRDRAFT_12097 zinc finger (c3hc4-type ring finger) family protein (zinc_ribbon_6)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_12097 chr_7 zinc finger (c3hc4-type ring finger) family protein (zinc_ribbon_6) 798945 799739 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0421

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0066
 0.37

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... cl17238 35.8844 0.000929891 142 - 187 specific 238093
RING superfamily RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... - 35.8844 0.000929891 142 - 187 superfamily 266579
zinc_ribbon_6 superfamily Zinc-ribbon; This is a typical zinc-ribbon finger, with each pair of zinc-ligands coming from more-... - 90.29 2.69E-23 188 - 248 superfamily 258737
zinc_ribbon_6 superfamily Zinc-ribbon; This is a typical zinc-ribbon finger, with each pair of zinc-ligands coming from more-... - 90.29 2.69E-23 188 - 248 superfamily 258737
zf-CHY superfamily CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many... - 49.6255 1.87E-08 3 - 89 superfamily 268214

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
444 Not available 270359 301302 Not available Cre05.g248550.t1.1 AT1G74770.1 323450

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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