PHATRDRAFT_12161 u2 snrnp-specific a protein (LRR_9)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_12161 chr_7 u2 snrnp-specific a protein (LRR_9) 759930 760758 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0149

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0124
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LRR_4 superfamily Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number... - 35.1532 0.00146136 47 - 82 superfamily 257306
LRR_4 superfamily Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number... - 35.1532 0.00146136 47 - 82 superfamily 257306
LRRcap superfamily occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich repeats... - 33.0493 0.00743239 129 - 147 superfamily 197729
LRRcap superfamily occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich repeats... - 33.0493 0.00743239 129 - 147 superfamily 197729
LRR_9 Leucine-rich repeat; Leucine-rich repeat. - 135.859 2.88E-39 1 - 175 multi-dom 258718

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
37240 Not available 181319 195603 249152 Cre16.g679600.t1.2 AT1G09760.1 552970

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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