PHATRDRAFT_12927 (LRR_RI superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_12927	chr_9	(LRR_RI superfamily)	485036	486764	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0347

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0095	0.39	0.00055 2800

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	54.669	1.71E-08	113 - 324	superfamily	238064
LRR_8		Leucine rich repeat; Leucine rich repeat.	-	34.8209	0.00661809	365 - 425	multi-dom	258126
LRR_8		Leucine rich repeat; Leucine rich repeat.	-	34.8209	0.00661809	365 - 425	multi-dom	258126

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
268761		Not available	208240	326394	Not available	Not available	AT4G20140.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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