PHATRDRAFT_14599 rna polymerase sigma factor (Sig70-cyanoRpoD)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_14599	chr_15	rna polymerase sigma factor (Sig70-cyanoRpoD)	115966	116916	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0481

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0095	0.39	0.00055 2800

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sigma70_r2 superfamily		Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All...	-	68.3717	5.92E-15	67 - 150	superfamily	252661
Sigma70_r2 superfamily		Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All...	-	68.3717	5.92E-15	67 - 150	superfamily	252661
Sigma70_r4		Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35...	cl17257	45.1089	7.82E-07	255 - 306	specific	218139
Sigma70_r4 superfamily		Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia...	-	45.1089	7.82E-07	255 - 306	superfamily	266592
Sigma70_r3 superfamily		Sigma-70 region 3; Region 3 forms a discrete compact three helical domain within the sigma-factor....	-	42.202	1.27E-05	160 - 240	superfamily	146934
Sig70-cyanoRpoD		RNA polymerase sigma factor, cyanobacterial RpoD-like family; This family includes a number of...	-	256.789	1.58E-83	1 - 305	multi-dom	234082

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	150855	246509	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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