PHATRDRAFT_16142 abc transporter related (Uup)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_16142 chr_23 abc transporter related (Uup) 360155 361708 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0497

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0040
 0.38

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 107.92 1.19E-27 1 - 231 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 40.603 0.000349661 31 - 142 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 107.92 1.19E-27 1 - 231 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 40.603 0.000349661 31 - 142 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 90.7143 4.40E-22 225 - 303 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 90.7143 4.40E-22 225 - 303 superfamily 257346
AAA_23 AAA domain; AAA domain. cl17201 40.603 0.000349661 31 - 142 specific 257800
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 40.603 0.000349661 31 - 142 superfamily 266551
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 403.94 7.88E-135 1 - 518 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
13551 Not available 208780 285520 66965 Cre06.g271850.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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