PHATRDRAFT_16168 aspartic protease (pepsin_retropepsin_like superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_16168	chr_24	aspartic protease (pepsin_retropepsin_like superfamily)	41414	42448	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0435

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0055	0.36	1500 14000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
pepsin_retropepsin_like superfamily		Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular and...	-	321.694	4.23E-108	18 - 341	superfamily	264354
Asp		Eukaryotic aspartyl protease; Aspartyl (acid) proteases include pepsins, cathepsins, and renins....	-	303.827	3.56E-101	25 - 341	multi-dom	249520

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
36297		Not available	268878	252441	362303	Cre04.g226850.t1.2	AT4G04460.1	352787

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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