PHATRDRAFT_17029 rna polymerase sigma factor (Sig70-cyanoRpoD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_17029 chr_31 rna polymerase sigma factor (Sig70-cyanoRpoD) 187010 187999 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0141

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0085
 0.45

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia... cl17257 54.0326 8.22E-10 255 - 313 specific 100119
Sigma70_r4 superfamily Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia... - 54.0326 8.22E-10 255 - 313 superfamily 266592
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 83.3945 1.57E-20 81 - 151 superfamily 252661
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 83.3945 1.57E-20 81 - 151 superfamily 252661
Sigma70_r3 superfamily Sigma-70 region 3; Region 3 forms a discrete compact three helical domain within the sigma-factor.... - 43.7428 4.10E-06 160 - 249 superfamily 146934
Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family; This family includes a number of... - 324.97 5.41E-110 1 - 313 multi-dom 234082

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33682 Not available 208134 234173 442619 Cre03.g194950.t1.1 AT1G08540.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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