PHATRDRAFT_17720 long chain acyl-coa synthetase (PLN02736)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_17720	chr_1	long chain acyl-coa synthetase (PLN02736)	1715546	1717724	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0188

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0044	0.37	0.52 2200

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LC-FACS_euk		Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS); The members of this family are...	cl17068	695.447	0	71 - 668	specific	213293
AFD_class_I superfamily		Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the...	-	695.447	0	71 - 668	superfamily	266508
PLN02736		long-chain acyl-CoA synthetase	-	604.785	0	40 - 672	multi-dom	178337

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
29867		Not available	208444	70228	418537	Cre12.g507400.t1.2	AT5G27600.1	314611

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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