PHATRDRAFT_19341 proteasome chain protein (proteasome_beta_type_2)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_19341	chr_5	proteasome chain protein (proteasome_beta_type_2)	344947	345764	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0147

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0125	0.29	3.9 3700

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
proteasome_beta_type_2		proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the...	cl00467	255.202	3.48E-86	1 - 190	specific	239727
Ntn_hydrolase superfamily		The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are...	-	255.202	3.48E-86	1 - 190	superfamily	260443
PRE1		20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,...	-	128.57	2.29E-36	1 - 186	multi-dom	223711

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
7964		Not available	205878	253415	361941	Cre14.g610950.t1.2	AT4G14800.1	288888

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments