PHATRDRAFT_19438 (HSR1_MMR1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_19438	chr_5	(HSR1_MMR1)	618267	619853	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0202

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0118	0.28	140 210

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HSR1_MMR1		A circularly permuted subfamily of the Ras GTPases; Human HSR1 is localized to the human MHC class...	cl17249	175.883	2.63E-52	186 - 414	specific	206750
YlqF_related_GTPase superfamily		Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, and...	-	175.883	2.63E-52	186 - 414	superfamily	247803
COG1161		Predicted GTPases [General function prediction only]	-	148.3	3.88E-40	179 - 528	multi-dom	224083

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
17657		Not available	204398	151645	61494	Cre16.g680944.t1.1	AT2G27200.1	321310

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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