PHATRDRAFT_20167 snrnp sm protein f-like (Sm_F)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_20167	chr_8	snrnp sm protein f-like (Sm_F)	53408	53814	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0147

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0133	0.27	7.9 370

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sm_F		Sm protein F; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a...	cl00259	130.025	1.50E-40	7 - 74	specific	212469
Sm_like superfamily		Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form...	-	130.025	1.50E-40	7 - 74	superfamily	260307

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
6522		Not available	272635	294113	317040	Cre05.g241300.t1.2	AT4G30220.1	316641

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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