PHATRDRAFT_21039 rna-binding protein (RRM_SF superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_21039 chr_11 rna-binding protein (RRM_SF superfamily) 283676 284413 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0393

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0128
 0.39

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 84.5675 3.00E-21 164 - 236 superfamily 266524
RRM RNA recognition motif; RNA recognition motif. cl17169 84.5675 3.00E-21 164 - 236 specific 214636
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 84.5675 3.00E-21 164 - 236 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 84.9986 8.94E-20 8 - 212 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
42447 Not available 186321 153689 420691 Cre12.g560300.t1.2 AT2G33410.1 526739

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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