PHATRDRAFT_23959 poly a bindingcytoplasmic 1 (PABP-1234)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_23959 chr_28 poly a bindingcytoplasmic 1 (PABP-1234) 300874 302925 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0142

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0209
 0.23

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM1_I_PABPs RNA recognition motif 1 in type I polyadenylate-binding proteins; This subfamily corresponds to the... cl17169 173.874 5.98E-52 40 - 119 specific 240824
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 107.66 5.04E-28 216 - 302 superfamily 266524
RRM4_I_PABPs RNA recognition motif 4 in type I polyadenylate-binding proteins; This subfamily corresponds to the... cl17169 158.166 2.54E-46 326 - 405 specific 240827
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 107.66 5.04E-28 216 - 302 superfamily 266524
RRM2_I_PABPs RNA recognition motif 2 found in type I polyadenylate-binding proteins; This subfamily corresponds... cl17169 154.632 4.95E-45 125 - 202 specific 240825
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 107.66 5.04E-28 216 - 302 superfamily 266524
PABP Poly-adenylate binding protein, unique domain; The region featured in this family is found towards... cl02642 118.039 9.01E-32 538 - 597 specific 250037
PABP superfamily Poly-adenylate binding protein, unique domain; The region featured in this family is found towards... - 118.039 9.01E-32 538 - 597 superfamily 261388
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 107.66 5.04E-28 216 - 302 superfamily 266524
PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize... - 690.007 0 39 - 597 multi-dom 130689

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
13224 Not available 172027 183117 418229 Cre01.g039300.t1.2 AT1G49760.2 354553

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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