PHATRDRAFT_26975 eukaryotic translation initiation factorsubunit 9 (COG5354)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_26975 chr_6 eukaryotic translation initiation factorsubunit 9 (COG5354) 1007411 1009624 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0151

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0209
 0.23

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_eIF3B RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar... cl17169 111.128 6.32E-29 41 - 131 specific 240724
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 111.128 6.32E-29 41 - 131 superfamily 266524
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 50.7964 4.72E-07 214 - 555 superfamily 238121
AT4G37440_like superfamily Uncharacterized protein domain conserved in plants; This domain contains an extensive protein... - 37.4023 0.0080521 618 - 664 superfamily 212164
COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] - 252.874 1.15E-74 170 - 659 multi-dom 227657
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 39.9302 0.0014393 83 - 123 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
37187 Not available 205041 68849 51173 Cre03.g190100.t1.1 AT5G25780.1 564272

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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