PHATRDRAFT_27821 dead (asp-glu-ala-asp) box polypeptide 21 (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_27821 chr_9 dead (asp-glu-ala-asp) box polypeptide 21 (DEADc) 848794 851352 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0123
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 233.916 3.45E-71 141 - 353 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 233.916 3.45E-71 141 - 353 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 126.584 1.38E-33 432 - 538 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 126.584 1.38E-33 432 - 538 superfamily 238034
GUCT_Hera RNA-binding GUCT-like domain found in Thermus thermophilus heat resistant RNA-dependent ATPase (... cl06960 70.79 9.31E-15 627 - 707 specific 240595
GUCT superfamily RNA-binding GUCT domain found in the RNA helicase II/Gu protein family; This family includes... - 70.79 9.31E-15 627 - 707 superfamily 263113
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 151.105 1.60E-41 152 - 359 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
13254 Not available 138392 297895 443976 Cre17.g727700.t1.1 AT5G26742.1 326516

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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