PHATRDRAFT_28219 26s proteasome atpase subunit (RPT1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_28219	chr_11	26s proteasome atpase subunit (RPT1)	452765	454265	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0183

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0125	0.29	3.9 3700

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	cl18944	105.306	5.96E-27	191 - 359	specific	99707
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	105.306	5.96E-27	191 - 359	superfamily	267297
RPT1		ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover,...	-	590.776	0	21 - 444	multi-dom	224143

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
264206		Not available	278878	216402	453760	Cre14.g625400.t1.1	AT1G53780.1	285612

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments