PHATRDRAFT_28551 dna-dependent atpase snf2h (PLN03142)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_28551 chr_12 dna-dependent atpase snf2h (PLN03142) 774607 778359 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0147

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0248
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 113.487 7.86E-29 453 - 580 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 113.487 7.86E-29 453 - 580 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 95.482 2.07E-22 169 - 314 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 95.482 2.07E-22 169 - 314 superfamily 266587
SLIDE superfamily SLIDE; The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices... - 128.085 3.97E-34 869 - 978 superfamily 255188
SLIDE superfamily SLIDE; The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices... - 128.085 3.97E-34 869 - 978 superfamily 255188
PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional - 1066.73 0 2 - 978 multi-dom 215601

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
12500 Not available 212111 236315 447960 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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