PHATRDRAFT_29812 actin a (ACTIN)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_29812	chr_19	actin a (ACTIN)	118461	119594	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0132

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0153	0.26	1400 99000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NBD_sugar-kinase_HSP70_actin		Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; This superfamily includes...	cl17037	74.1623	9.19E-16	10 - 183	specific	212657
NBD_sugar-kinase_HSP70_actin superfamily		Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; This superfamily includes...	-	38.5639	0.00180422	273 - 336	superfamily	266502
NBD_sugar-kinase_HSP70_actin superfamily		Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; This superfamily includes...	-	38.5639	0.00180422	273 - 336	superfamily	266502
ACTIN		Actin; ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily	-	629.674	0	8 - 377	multi-dom	214592

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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