PHATRDRAFT_33304 small nuclear ribonucleoprotein d2-like protein (Sm_D2)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_33304	chr_3	small nuclear ribonucleoprotein d2-like protein (Sm_D2)	562980	563444	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0173

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0013	0.38	0.0000016 5200

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sm_D2		Sm protein D2; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a...	cl00259	165.967	8.17E-54	18 - 107	specific	212467
Sm_like superfamily		Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form...	-	165.967	8.17E-54	18 - 107	superfamily	260307

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
37430		Not available	277449	262229	439549	Cre10.g453450.t1.2	AT3G62840.2	559644

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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