PHATRDRAFT_34965 radical sam domain protein (TIGR00238 superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_34965	chr_6	radical sam domain protein (TIGR00238 superfamily)	769402	770814	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0410

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0130	0.35	0.0002 2400

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TIGR00238 superfamily		KamA family protein; This model represents essentially the whole of E. coli YjeK and of some of its...	-	122.637	1.90E-31	66 - 384	superfamily	265681
Radical_SAM		Radical SAM superfamily; Radical SAM proteins catalyse diverse reactions, including unusual...	-	44.8335	6.48E-06	172 - 331	multi-dom	252342

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
24127		Not available	223177	240854	469785	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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