PHATRDRAFT_35058 periplasmic binding protein (TroA-like superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_35058	chr_6	periplasmic binding protein (TroA-like superfamily)	976209	978227	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0442

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0003	0.71	94000 140000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TroA-like superfamily		Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in...	-	139.742	2.24E-37	19 - 336	superfamily	260309
AANH_like superfamily		Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases...	-	60.6983	8.63E-11	468 - 654	superfamily	260331
Peripla_BP_2		Periplasmic binding protein; This family includes bacterial periplasmic binding proteins. Several...	-	58.915	5.07E-10	20 - 318	multi-dom	250662

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
6592		Not available	179872	190979	201307	Cre06.g278168.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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