PHATRDRAFT_35311 (Nucleoporin_C superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_35311	chr_7	(Nucleoporin_C superfamily)	602732	608497	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0226

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0123	0.20	1.1 4.6

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nucleoporin_C superfamily		Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of...	-	86.0395	2.63E-17	1406 - 1633	superfamily	251780
Nucleoporin_N		Nup133 N terminal like; Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC)...	-	82.1078	1.51E-16	110 - 404	multi-dom	255046

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
20620		Not available	227363	210312	Not available	Cre09.g394350.t1.2	Not available	297338

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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