PHATRDRAFT_36048 vde_spiolviolaxanthin de-chloroplast precursor (VDE superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_36048	chr_9	vde_spiolviolaxanthin de-chloroplast precursor (VDE superfamily)	433920	435146	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0123

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0180	0.25	1.3 45

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VDE superfamily		Violaxanthin de-epoxidase (VDE); This family represents a conserved region approximately 150...	-	122.257	4.52E-31	47 - 362	superfamily	262831

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
268592		Not available	271689	Not available	445463	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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