PHATRDRAFT_36970 (PPR_2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_36970 chr_11 (PPR_2) 777259 778503 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0203

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0231
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PPR_2 PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... cl03252 46.627 4.64E-07 109 - 148 specific 257477
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 36.2266 0.00172463 234 - 282 superfamily 261658
Smr Smr domain; This family includes the Smr (Small MutS Related) proteins, and the C-terminal region... cl02619 38.3971 0.000355304 323 - 399 specific 250812
Smr superfamily Smr domain; This family includes the Smr (Small MutS Related) proteins, and the C-terminal region... - 38.3971 0.000355304 323 - 399 superfamily 261374
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 36.2266 0.00172463 234 - 282 superfamily 261658
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 36.2266 0.00172463 234 - 282 superfamily 261658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
8438 Not available 186319 235815 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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