PHATRDRAFT_37272 sjchgc02538 protein (HMG-box)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_37272	chr_12	sjchgc02538 protein (HMG-box)	583442	584723	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0345

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0043	0.34	0.000000024 16000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HMG-box		High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and...	cl00082	52.6211	3.66E-09	15 - 80	specific	238037
HMG-box superfamily		High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and...	-	48.0078	1.45E-07	100 - 175	superfamily	260179
HMGB-UBF_HMG-box		HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins....	cl00082	48.0078	1.45E-07	100 - 175	specific	238686
HMG-box superfamily		High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and...	-	48.0078	1.45E-07	100 - 175	superfamily	260179

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	201373	115181	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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