PHATRDRAFT_37523 (PHD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_37523 chr_13 (PHD) 339708 343685 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0048
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PHD PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... cl17445 61.742 1.46E-11 700 - 744 specific 250011
PHD superfamily PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... - 61.742 1.46E-11 700 - 744 superfamily 266687
DDT superfamily DDT domain; The DDT domain is named after (DNA binding homeobox and Different Transcription factors... - 39.5382 0.000559361 80 - 135 superfamily 243137
WHIM1 superfamily WSTF, HB1, Itc1p, MBD9 motif 1; A conserved alpha helical motif that along with the WHIM2 and WHIM3... - 36.4443 0.00530138 628 - 672 superfamily 259743
WHIM1 superfamily WSTF, HB1, Itc1p, MBD9 motif 1; A conserved alpha helical motif that along with the WHIM2 and WHIM3... - 36.4443 0.00530138 628 - 672 superfamily 259743
zf-PHD-like PHD/FYVE-zinc-finger like domain; This family appears to be a combination domain of several... - 40.7245 0.000703474 700 - 807 multi-dom 259577

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 234952 283452 Not available Not available AT5G12400.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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