PHATRDRAFT_37731 (zf-UBR)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_37731	chr_13	(zf-UBR)	821451	825974	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0224

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0214	0.23	0.00000000001 0.00000000023

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-UBR		Putative zinc finger in N-recognin (UBR box); This region is found in E3 ubiquitin ligases that...	cl19744	118.627	4.40E-31	340 - 410	specific	251157
zf-UBR superfamily		Putative zinc finger in N-recognin (UBR box); This region is found in E3 ubiquitin ligases that...	-	118.627	4.40E-31	340 - 410	superfamily	268097
ClpS superfamily		ATP-dependent Clp protease adaptor protein ClpS; In the bacterial cytosol, ATP-dependent protein...	-	51.7075	7.48E-08	544 - 622	superfamily	260704

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
23971		Not available	Not available	Not available	239450	Cre02.g089237.t1.1	Not available	530881

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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