PHATRDRAFT_38474 rna-binding region rnp-1 (RRM_SF)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_38474	chr_16	rna-binding region rnp-1 (RRM_SF)	203356	203910	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0294

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0150	0.31	0.0000036 12000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	cl17169	76.5749	1.23E-18	69 - 135	specific	240668
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	76.5749	1.23E-18	69 - 135	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	58.805	4.99E-11	48 - 143	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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