PHATRDRAFT_39341 gag-pol polyprotein (rve)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_39341 chr_19 gag-pol polyprotein (rve) 245285 248973 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0413

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0203
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
rve superfamily Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the... - 49.2541 5.24E-07 814 - 904 superfamily 250040
rve superfamily Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the... - 49.2541 5.24E-07 814 - 904 superfamily 250040
gag_pre-integrs superfamily GAG-pre-integrase domain; This domain is found associated with retroviral insertion elements and... - 46.196 3.05E-06 681 - 750 superfamily 258228
gag_pre-integrs superfamily GAG-pre-integrase domain; This domain is found associated with retroviral insertion elements and... - 46.196 3.05E-06 681 - 750 superfamily 258228
zf-CCHC Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C... cl15298 42.4413 3.91E-05 367 - 383 specific 189387
zf-CCHC superfamily Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C... - 42.4413 3.91E-05 367 - 383 superfamily 199156

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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