PHATRDRAFT_40273 (PUB superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_40273 chr_22 (PUB superfamily) 572885 573979 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0377

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0039
 0.39

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members... cl00153 37.0535 0.000580373 1 - 28 specific 238116
UBA superfamily Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members... - 37.0535 0.000580373 1 - 28 superfamily 260220
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 67.027 5.07E-14 135 - 223 superfamily 265658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22796 Not available 268880 301828 432887 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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