PHATRDRAFT_42015 succinyl-ligase alpha subunit (PTZ00187)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42015 chr_9 succinyl-ligase alpha subunit (PTZ00187) 717119 718204 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0225
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CoA_binding CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including... cl17356 126.527 4.51E-36 10 - 103 specific 251432
CoA_binding superfamily CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including... - 126.527 4.51E-36 10 - 103 superfamily 266646
Ligase_CoA superfamily CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains,... - 91.9337 4.78E-23 156 - 278 superfamily 249950
PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional - 516.19 0 2 - 295 multi-dom 240307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
411 Not available 269015 244389 417649 Cre03.g193850.t1.2 AT5G08300.1 557468

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments