PHATRDRAFT_42289 syk_crigrlysyl-trna synthetase (lysine--trna ligase) (PLN02502)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42289 chr_22 syk_crigrlysyl-trna synthetase (lysine--trna ligase) (PLN02502) 79178 85279 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0143

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0209
 0.23

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a... cl00268 538.709 0 175 - 509 specific 238398
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 538.709 0 175 - 509 superfamily 260313
LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes... cl19106 164.958 1.11E-48 58 - 172 specific 239817
Asp_Lys_Asn_RS_N superfamily Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (... - 164.958 1.11E-48 58 - 172 superfamily 267459
PLN02502 lysyl-tRNA synthetase - 898.584 0 1 - 511 multi-dom 215278

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
29232 Not available 262587 234761 426543 Cre03.g160500.t1.2 AT3G11710.1 551244

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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