PHATRDRAFT_42626
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42626 chr_1 638751 641147 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0209

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0215
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Tet_JBP superfamily Oxygenase domain of the 2OGFeDO superfamily; A double-stranded beta helix (DSBH) fold domain of the... - 40.8038 0.000276922 680 - 780 superfamily 257349
PseudoU_synth_1 superfamily tRNA pseudouridine synthase; Involved in the formation of pseudouridine at the anticodon stem and... - 35.1095 0.00996342 355 - 458 superfamily 250602
PseudoU_synth_1 superfamily tRNA pseudouridine synthase; Involved in the formation of pseudouridine at the anticodon stem and... - 35.1095 0.00996342 355 - 458 superfamily 250602

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
23106 Not available 190084 183298 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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