PHATRDRAFT_42828 rna recognition(or rnp) domain containing protein (RRM_SF superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42828 chr_1 rna recognition(or rnp) domain containing protein (RRM_SF superfamily) 1255253 1257087 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0424

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0006
 0.56

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM3_CELF1-6 RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3,... cl17169 136.227 8.08E-39 402 - 474 specific 240808
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 100.699 6.77E-26 210 - 285 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 100.699 6.77E-26 210 - 285 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 100.699 6.77E-26 210 - 285 superfamily 266524
ELAV_HUD_SF ELAV/HuD family splicing factor; This model describes the ELAV/HuD subfamily of splicing factors... - 143.542 2.61E-38 125 - 476 multi-dom 233516

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
261541 Not available 208519 179721 71934 Cre03.g177200.t1.2 AT4G03110.1 353005

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments