PHATRDRAFT_43016 valyl trna synthetase (PTZ00419)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43016 chr_1 valyl trna synthetase (PTZ00419) 1801809 1805387 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0140

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0230
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ValRS_core catalytic core domain of valyl-tRNA synthetases; Valine amino-acyl tRNA synthetase (ValRS)... cl00015 574.965 0 118 - 727 specific 185677
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 574.965 0 118 - 727 superfamily 260139
Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases; This domain is found in valyl tRNA synthetases... cl12020 177.749 2.73E-51 727 - 870 specific 153416
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 177.749 2.73E-51 727 - 870 superfamily 264512
tRNA-synt_1_2 superfamily Leucyl-tRNA synthetase, Domain 2; This is a family of the conserved region of Leucine-tRNA ligase... - 60.5711 1.75E-10 308 - 419 superfamily 257918
PTZ00419 valyl-tRNA synthetase-like protein; Provisional - 1474.86 0 63 - 1062 multi-dom 240411

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre12.g537100.t1.2 AT5G16715.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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