PHATRDRAFT_43132 (RING)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_43132	chr_1	(RING)	2115183	2116883	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0019

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0035	0.39	230 940

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	48.2108	1.81E-07	20 - 62	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	48.2108	1.81E-07	20 - 62	superfamily	266579
YopD superfamily		YopD protein; This family consists of several bacterial YopD like proteins. Virulent Yersinia...	-	39.431	0.00144889	250 - 299	superfamily	253418

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	261295	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments