PHATRDRAFT_43208 vegetatible incompatibility protein (WD40 superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_43208	chr_1	vegetatible incompatibility protein (WD40 superfamily)	2315209	2316528	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0225

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0041	0.40	4400 8200

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	71.212	4.27E-14	81 - 321	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	58.9467	8.93E-10	77 - 337	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
25773		Not available	216160	306556	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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