PHATRDRAFT_43378 (CHD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43378 chr_2 (CHD) 286832 292889 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0361

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0070
 0.42

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 75.3082 6.19E-15 376 - 579 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 75.3082 6.19E-15 376 - 579 superfamily 264492
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 75.3082 6.19E-15 376 - 579 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 75.3082 6.19E-15 376 - 579 superfamily 264492
AAA_16 AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA... cl18944 43.9905 5.39E-05 880 - 935 specific 257559
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 43.9905 5.39E-05 880 - 935 superfamily 267297
CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms] - 58.7062 1.69E-09 375 - 433 multi-dom 225025
CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms] - 58.7062 1.69E-09 375 - 433 multi-dom 225025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22442 Not available Not available Not available 438355 Cre01.g053450.t1.1 Not available 501470

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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